Kazusa Genome Atlas
Scientific name Accession name Assembly version Publication
Actinidia arguta Ubaishi-male AAR_r2.2 Akagi et al. (2023)
Actinidia polygama Hokkaido-male APO_r1.1 Akagi et al. (2023)
Actinidia rufa Nakamura-B-male ARU_r1.0 Akagi et al. (2023)
Anabaena sp. PCC 7120 ASM970v1 Kaneko et al. (2001)
Ananas comosus Yugafu ACO_r3.3C.pmol Nashima et al. (2022)
Ananas comosus Yugafu ACO_r3.3H Nashima et al. (2022)
Arabidopsis thaliana Col-1 TAIR10 The Arabidopsis Genome Initiative (2000)
Arachis duranensis V14167 V14167.gnm1.SWBf Bertioli et al. (2016)
Arachis hypogaea Tifrunner Tifrunner.gnm2.J5K5 Bertioli et al. (2019)
Arachis ipaensis K30076 K30076.gnm1.bXJ8 Bertioli et al. (2016)
Asparagus kiusianus K1 AKIK1p1_r1.0 Shirasawa et al. (2022)
Asparagus kiusianus K1 AKIK1p2_r1.0 Shirasawa et al. (2022)
Asparagus kiusianus K2 AKIK2p1_r1.0 Shirasawa et al. (2022)
Asparagus kiusianus K2 AKIK2p2_r1.0 Shirasawa et al. (2022)
Bradyrhizobium japonicum USDA110 ASM1136v1 Kaneko et al. (2002)
Brassica rapa Chiifu-401-42 v3.0 Wang et al. (2011)
Capsicum annuum Takanotsume CAN_r1.2.pmol Shirasawa et al. (2023)
Castanea crenata Ginyose CCR_r1.0 Shirasawa et al. (2021)
Cerasus x kanzakura Atami-zakura ATM_r1.0.pmol Shirasawa et al. (2021)
Cerasus x kanzakura Kawazu-zakura KWZ_r1.0.pmol Shirasawa et al. (2021)
Cerasus x yedoensis #136 CYE_r3.1.pmol Shirasawa et al. (2019)
Chamaecyparis obtusa GFB00119 COB_r1.0 Shirasawa et al. (2022)
Chenopodium quinoa J075 J075 Kobayashi et al. (2024)
Chenopodium quinoa J100 J100 Kobayashi et al. (2024)
Chenopodium quinoa Kd Cqu_r1.0 Yasui et al. (2016)
Chrysanthemum seticuspe Gojo-0 Gojo-0 v1 Nakano et al. (2021)
Chrysanthemum seticuspe XMRS10 CSE_r1.0 Hirakawa et al. (2019)
Citrus kinokuni Kishu mandarin CKIuph_r1.0 Isobe et al. (2023)
Citrus kinokuni Kishu mandarin CKIhap1_r1.0 Isobe et al. (2023)
Citrus kinokuni Kishu mandarin CKIhap2_r1.0 Isobe et al. (2023)
Citrus nobilis Kunenbo mandarin CKUuph_r1.0 Isobe et al. (2023)
Citrus nobilis Kunenbo mandarin CKUhap1_r1.0 Isobe et al. (2023)
Citrus nobilis Kunenbo mandarin CKUhap2_r1.0 Isobe et al. (2023)
Citrus unshiu Miyagawa wase CUNuph_r1.0 Isobe et al. (2023)
Citrus unshiu Miyagawa wase CUNphKi_r1.0 Isobe et al. (2023)
Citrus unshiu Miyagawa wase CUNphKu_r1.0 Isobe et al. (2023)
Cryptomeria japonica GFA01029 CJA_r1.0 Shirasawa et al. (2022)
Cunninghamia lanceolata GFHN00090 CLA_r1.0 Shirasawa et al. (2022)
Dianthus caryophyllus Francesco DCA_r1.0 Yagi et al. (2014)
Diospyros kaki Taishu DKA_r1.0 Horiuchi et al. (2023)
Diospyros lotus Kunsenshi-male DLO_r1.0_pseudomolecules Akagi et al. (2020)
Echinochloa phyllopogon R511 EPH_r1.1 Sato MP et al. (2023)
Eschscholzia californica Hitoezaki ECA_r1.0 Yamada et al. (2021)
Eucalyptus camaldulensis CPT1 EUC_r1.0 Hirakawa et al. (2011)
Eustoma grandiflorum 10B-620 Egra_v1.0 Shirasawa et al. (2023)
Fagopyrum esculentum BC1F6 FES_r1.0 Yasui et al. (2016)
Fagopyrum esculentum GS1 FesGS1_phased_r1.0 Fawcett et al. (2023)
Fagopyrum esculentum PL4 FesPL4_r1.1_pseudomolecule_contigs Fawcett et al. (2023)
Fagopyrum homotropicum C9255 Fho_r1.0_Chr1-8_utg Fawcett et al. (2023)
Felis catus Senzu AnAms1.0 Matsumoto et al. (2024)
Ficus carica Caprifig 6085 FCA6085_r1.1 Ikegami et al. (2024)
Ficus carica Horaishi FCA_r2.3 Ikegami et al. (2024)
Ficus carica Horaishi Horaishi_ver.1 Mori et al. (2017)
Ficus erecta FE-Hiroshima-1 FER_r1.1 Shirasawa et al. (2020)
Fragaria iinumae iinumae1 FII_r1.1 Hirakawa et al. (2014)
Fragaria nipponica nipponica1 FNI_r1.1 Hirakawa et al. (2014)
Fragaria nubicola CFRA522 FNU_r1.1 Hirakawa et al. (2014)
Fragaria orientalis FRA536 FOR_r1.1 Hirakawa et al. (2014)
Fragaria x ananassa Reikou FAN_r2.3 Shirasawa et al. (2021)
Fragaria x ananassa Reikou FANhybrid_r1.2 Hirakawa et al. (2014)
Gloeobacter violaceus PCC 7421 ASM1138v1 Nakamura et al. (2003)
Glycine soja W05 ASM419377v2 Xie et al. (2019)
Glycyrrhiza uralensis 308-19 Glur_r1.0 Rai et al. (2022)
Hordeum vulgare 10TJ18 BPGv2-10TJ18 Jayakodi et al. (2024)
Hordeum vulgare Aizu6 BPGv2-Aizu6 Jayakodi et al. (2024)
Hordeum vulgare Golden Melon BPGv2-GoldenMelon Jayakodi et al. (2024)
Hydrangea macrophylla Aogashima-1 HMA_r1.2_0 Nashima et al. (2021)
Hydrangea macrophylla Aogashima-1 HMA_r1.2_1 Nashima et al. (2021)
Ipomoea batatas Xushu18 IBA_r1.0 Yoon et al. (2022)
Ipomoea trifida 0431-1 ITRk_r1.0 Hirakawa et al. (2015)
Ipomoea trifida Mx23Hm ITR_r2.2 Yoon et al. (2022)
Ipomoea trifida Mx23Hm ITR_r1.0 Hirakawa et al. (2015)
Jatropha curcas N/A JAT_r4.5 Hirakawa et al. (2012)
Jatropha curcas N/A JAT_r3.0 Sato S et al. (2011)
Klebsormidium flaccidum NIES-2285 ASM70883v1 Hori et al. (2014)
Larix kaempferi GFE32203 LKA_r1.0 Shirasawa et al. (2022)
Lentinula edodes New XR1 xr1.hap1 Yoshitake et al. (2025)
Lentinula edodes New XR1 xr1.hap2 Yoshitake et al. (2025)
Lotus japonicus MG-20 Lj2.5 Sato S et al. (2008)
Lyophyllum shimeji AT787 LshimejAT787 Kobayashi et al. (2023)
Macrotyloma uniflorum HPK-4 MUN_r1.11 Shirasawa et al. (2021)
Malpighia emarginata NRA309 NRA309_r1.0.pmol Shirasawa et al. (2024)
Meloidogyne incognita Kmmt_Gs004 MINJ2 Asamizu et al. (2020)
Mesorhizobium japonicum MAFF 303099 ASM962v1 Kaneko et al. (2000)
Microcystis aeruginosa NIES-843 ASM1062v1 Kaneko et al. (2007)
Nicotiana benthamiana lab strain Nbe.v1.1 Kurotani et al. (2024)
Nicotiana benthamiana lab strain Nbe.v1 Kurotani et al. (2023)
Ophiorrhiza pumila Benth Opu_r1.4 Rai et al. (2021)
Pisum sativum JI128 PSA_r1.0 Shirasawa et al. (2021)
Prunus avium Satonishiki PAV_r1.0 Shirasawa et al. (2017)
Pyrus pyrifolia Nijisseiki PPY_r1.0 Shirasawa et al. (2021)
Raphanus sativus Aokubi S-h RSA_r1.0 Kitashiba et al. (2014)
Raphanus sativus Okute-Sakurajima RSAskr_r1.0 Shirasawa et al. (2020)
Rhododendron kiyosumense KMT1 RKI_r1.0 Shirasawa et al. (2021)
Rhododendron ripense Hi-Oni1 RRI_r1.1.pmol Shirasawa et al. (2021)
Rosa multiflora N/A RMU_r2.0 Nakamura et al. (2018)
Saintpaulia ionantha Kilauea SIO_r2.0 Kurata et al. (2024)
Silene dioica SdJapan_07M Sdio1.0 Akagi et al. (2025)
Silene latifolia SLGerPM1 Slat1.0 Akagi et al. (2025)
Silene vulgaris SvPH1 Svul1.0 Akagi et al. (2025)
Solanum cheesmaniae LA0166 SCH_r1.0.pmol Iki et al. (2025)
Solanum lycopersicum Heinz 1706 SL4.0 The Tomato Genome Consortium (2012)
Solanum lycopersicum LA1673 SLYcer_r1.1 Takei et al. (2021)
Solanum lycopersicum Micro-Tom SLM_r2.0.pmol Shirasawa & Ariizumi (2024)
Solanum lycopersicum Micro-Tom SLM_r1.2 Nagasaki et al. (2024)
Solanum melongena Nakate-Shinkuro SME_r2.5.1 Hirakawa et al. (2014)
Solanum pimpinellifolium LA1670 SPI_r1.1 Takei et al. (2021)
Spinacia oleracea 03-009 SOL_r1.1 Hirakawa et al. (2021)
Synechocystis sp. PCC 6803 ASM972v1 Kaneko et al. (1996)
Thermosynechococcus elongatus BP-1 ASM1134v1 Nakamura et al. (2002)
Tricholoma matsutake Matsutake TMA_r1.1 Kurokochi et al. (2023)
Trifolium alexandrinum Fahl TalF_r1.0 Sato MP et al. (2024)
Trifolium alexandrinum Helaly TalH_r1.0 Sato MP et al. (2024)
Trifolium subterraneum Daliak TSUd_r3.0 Shirasawa et al. (2023)
Trifolium subterraneum Daliak TSUd_r1.1 Hirakawa et al. (2016)
Triticum aestivum Fielder wheat_cv_fielder_v1_assembly Sato K et al. (2021)
Turritopsis dohrnii TD-1 TUR_r2.0.1 Hasegawa et al. (2023)
Veronica peregrina Sakai03 VPE_r1.0p Hirano et al. (2024)
Vicia sativa KSR5 VSA_r1.0 Shirasawa et al. (2021)
Vitis labruscana x Vitis vinifera Shine Muscat VSMuph_r2.0 Shirasawa et al. (2022)
Zoysia japonica Nagirizaki ZJN_r1.1 Tanaka et al. (2016)
Zoysia matrella Wakaba ZMW_r1.0 Tanaka et al. (2016)
Zoysia pacifica Zanpa ZPZ_r1.0 Tanaka et al. (2016)

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