| Scientific name | Accession name | Assembly version | Publication | PR |
|---|
 |
Lyophyllum shimeji
|
AT787 | LshimejAT787 | Kobayashi et al. (2023) |
|
 |
Lentinula edodes
|
XR1 | xr1.hap1 | Yoshitake et al. (2025) |
|
|
|
Lentinula edodes
|
XR1 | xr1.hap2 | Yoshitake et al. (2025) |
|
 |
Tricholoma matsutake
|
Matsutake | TMA_r1.1 | Kurokochi et al. (2023) |
|
 |
Asparagus kiusianus
|
K1 | AKIK1p1_r1.0 | Shirasawa et al. (2022) |
|
|
|
Asparagus kiusianus
|
K1 | AKIK1p2_r1.0 | Shirasawa et al. (2022) |
|
|
|
Asparagus kiusianus
|
K2 | AKIK2p1_r1.0 | Shirasawa et al. (2022) |
|
|
|
Asparagus kiusianus
|
K2 | AKIK2p2_r1.0 | Shirasawa et al. (2022) |
|
 |
Chrysanthemum seticuspe
|
Gojo-0 | Gojo-0 v1 | Nakano et al. (2021) |
|
|
|
Chrysanthemum seticuspe
|
XMRS10 | CSE_r1.0 | Hirakawa et al. (2019) |
|
 |
Gerbera hybrida
|
Opal | Ghyb_p1.1 | Aoyagi et al. (2026) |
|
 |
Arabidopsis thaliana
|
Col-1 | TAIR10 | The Arabidopsis Genome Initiative (2000) |
|
 |
Brassica rapa
|
Chiifu-401-42 | v3.0 | Wang et al. (2011) |
|
 |
Malcolmia littorea
|
MAL-LIT-1 [Sp-54] | MLI_r1.0 | Shirasawa et al. (2026) |
|
 |
Raphanus sativus
|
Aokubi S-h | RSA_r1.0 | Kitashiba et al. (2014) |
|
|
 |
Raphanus sativus
|
Okute-Sakurajima | RSAskr_r1.0 | Shirasawa et al. (2020) |
|
 |
Chenopodium quinoa
|
J075 | J075 | Kobayashi et al. (2024) |
|
|
|
Chenopodium quinoa
|
J100 | J100 | Kobayashi et al. (2024) |
|
|
|
Chenopodium quinoa
|
J131 | J131 | Kushino et al. (2025) | ||
|
Chenopodium quinoa
|
Kd | Cqu_r1.0 | Yasui et al. (2016) |
|
 |
Spinacia oleracea
|
03-009 | SOL_r1.1 | Hirakawa et al. (2021) |
|
 |
Dianthus caryophyllus
|
Francesco | DCA_r1.0 | Yagi et al. (2014) |
|
 |
Silene dioica
|
SdJapan_07M | Sdio1.0 | Akagi et al. (2025) | ||
|
Silene latifolia
|
SLGerPM1 | Slat1.0 | Akagi et al. (2025) | ||
|
Silene vulgaris
|
SvPH1 | Svul1.0 | Akagi et al. (2025) |
 |
Fagopyrum esculentum
|
BC1F6 | FES_r1.0 | Yasui et al. (2016) |
|
|
|
Fagopyrum esculentum
|
GS1 | FesGS1_phased_r1.0 | Fawcett et al. (2023) |
|
|
|
Fagopyrum esculentum
|
PL4 | FesPL4_r1.1_pseudomolecule_contigs | Fawcett et al. (2023) |
|
|
|
Fagopyrum homotropicum
|
C9255 | Fho_r1.0_Chr1-8_utg | Fawcett et al. (2023) |
|
 |
Hydrangea macrophylla
|
Aogashima-1 | HMA_r1.2_0 | Nashima et al. (2021) |
|
|
|
Hydrangea macrophylla
|
Aogashima-1 | HMA_r1.2_1 | Nashima et al. (2021) |
|
 |
Chamaecyparis obtusa
|
GFB00119 | COB_r1.0 | Shirasawa et al. (2022) |
|
|
|
Chamaecyparis obtusa
|
GFB00119 | COB_r1.0.genome | Shirasawa et al. (2026) |
 |
Cryptomeria japonica
|
GFA01029 | CJA_r1.0 | Shirasawa et al. (2022) |
|
|
|
Cryptomeria japonica
|
GFA01029 | CJA_r1.0.genome | Shirasawa et al. (2026) |
 |
Cunninghamia lanceolata
|
GFHN00090 | CLA_r1.0 | Shirasawa et al. (2022) |
|
|
|
Cunninghamia lanceolata
|
GFHN00090 | CLA_r1.0.genome | Shirasawa et al. (2026) |
 |
Actinidia arguta
|
Ubaishi-male | AAR_r2.2 | Akagi et al. (2023) |
|
|
 |
Actinidia polygama
|
Hokkaido-male | APO_r1.1 | Akagi et al. (2023) |
|
|
 |
Actinidia rufa
|
Nakamura-B-male | ARU_r1.0 | Akagi et al. (2023) |
|
 |
Diospyros kaki
|
Taishu | DKA_r1.0 | Horiuchi et al. (2023) |
|
|
 |
Diospyros lotus
|
Kunsenshi-male | DLO_r1.0_pseudomolecules | Akagi et al. (2020) |
|
 |
Rhododendron kiyosumense
|
KMT1 | RKI_r1.0 | Shirasawa et al. (2021) |
|
|
 |
Rhododendron ripense
|
Hi-Oni1 | RRI_r1.1.pmol | Shirasawa et al. (2021) |
|
 |
Arachis duranensis
|
V14167 | V14167.gnm1.SWBf | Bertioli et al. (2016) |
|
|
|
Arachis hypogaea
|
Tifrunner | Tifrunner.gnm2.J5K5 | Bertioli et al. (2019) |
|
|
|
Arachis ipaensis
|
K30076 | K30076.gnm1.bXJ8 | Bertioli et al. (2016) |
|
 |
Glycine soja
|
W05 | ASM419377v2 | Xie et al. (2019) |
|
 |
Glycyrrhiza uralensis
|
308-19 | Glur_r1.0 | Rai et al. (2022) |
|
 |
Lotus japonicus
|
MG-20 | Lj2.5 | Sato S et al. (2008) |
|
 |
Macrotyloma uniflorum
|
HPK-4 | MUN_r1.11 | Shirasawa et al. (2021) |
|
 |
Pisum sativum
|
JI128 | PSA_r1.0 | Shirasawa et al. (2021) |
|
 |
Trifolium alexandrinum
|
Fahl | TalF_r1.0 | Sato MP et al. (2024) |
|
|
|
Trifolium alexandrinum
|
Helaly | TalH_r1.0 | Sato MP et al. (2024) |
|
|
|
Trifolium subterraneum
|
Daliak | TSUd_r1.1 | Hirakawa et al. (2016) |
|
|
|
Trifolium subterraneum
|
Daliak | TSUd_r3.0 | Shirasawa et al. (2023) |
|
 |
Vicia sativa
|
KSR5 | VSA_r1.0 | Shirasawa et al. (2021) |
|
 |
Castanea crenata
|
Ginyose | CCR_r1.0 | Shirasawa et al. (2021) |
|
 |
Eustoma grandiflorum
|
10B-620 | Egra_v1.0 | Shirasawa et al. (2023) |
|
 |
Ophiorrhiza pumila
|
Benth | Opu_r1.4 | Rai et al. (2021) |
|
 |
Klebsormidium flaccidum
|
NIES-2285 | ASM70883v1 | Hori et al. (2014) |
|
 |
Saintpaulia ionantha
|
Kilauea | SIO_r2.0 | Kurata et al. (2024) |
 |
Perilla frutescens
|
SekihoS8 | Pfru_SekihoUp_1.0 | Kinoshita et al. (2025) |
|
 |
Veronica peregrina
|
Sakai03 | VPE_r1.0p | Hirano et al. (2025) |
|
 |
Jatropha curcas
|
N/A | JAT_r3.0 | Sato S et al. (2011) |
|
|
|
Jatropha curcas
|
N/A | JAT_r4.5 | Hirakawa et al. (2012) |
 |
Malpighia emarginata
|
NRA309 | NRA309_r1.0.pmol | Shirasawa et al. (2024) |
|
 |
Eucalyptus camaldulensis
|
CPT1 | EUC_r1.0 | Hirakawa et al. (2011) |
|
 |
Oxalis corniculata
|
Green-leaved line | OCOG_r3.0 | Iimura et al. (2026) | ||
|
Oxalis corniculata
|
Red-leaved line | OCOR_r3.0 | Iimura et al. (2026) |
 |
Larix kaempferi
|
GFE32203 | LKA_r1.0 | Shirasawa et al. (2022) |
|
 |
Ananas comosus
|
Yugafu | ACO_r3.3C.pmol | Nashima et al. (2022) |
|
|
|
Ananas comosus
|
Yugafu | ACO_r3.3H | Nashima et al. (2022) |
|
 |
Echinochloa phyllopogon
|
R511 | EPH_r1.1 | Sato MP et al. (2023) |
|
 |
Hordeum vulgare
|
10TJ18 | BPGv2-10TJ18 | Jayakodi et al. (2024) |
|
|
|
Hordeum vulgare
|
Aizu6 | BPGv2-Aizu6 | Jayakodi et al. (2024) |
|
|
|
Hordeum vulgare
|
Golden Melon | BPGv2-GoldenMelon | Jayakodi et al. (2024) |
|
 |
Oryza sativa
|
Kitaake | KIT_r1.0.pmol | Fujino et al., unpublished | ||
|
Oryza sativa
|
Udai21 | UD21_r1.0 | Ikeda et al. (2025) |
|
|
Triticum aestivum
|
Fielder | wheat_cv_fielder_v1_assembly | Sato K et al. (2021) |
 |
Zoysia japonica
|
Nagirizaki | ZJN_r1.1 | Tanaka et al. (2016) |
|
|
|
Zoysia matrella
|
Wakaba | ZMW_r1.0 | Tanaka et al. (2016) |
|
|
|
Zoysia pacifica
|
Zanpa | ZPZ_r1.0 | Tanaka et al. (2016) |
|
 |
Eschscholzia californica
|
Hitoezaki | ECA_r1.0 | Yamada et al. (2021) |
 |
Humulus japonicus
|
Seta-line | hic_chr_v1.1 | Akagi et al. (2025) |
|
|
 |
Humulus lupulus
|
10-12 | haploid_v3.0 | Akagi et al. (2025) |
|
|
|
Humulus lupulus
|
Saaz | haploid_v3.0 | Akagi et al. (2025) |
|
 |
Ficus carica
|
Caprifig 6085 | FCA6085_r1.1 | Ikegami et al. (2024) |
|
|
|
Ficus carica
|
Horaishi | FCA_r2.3 | Ikegami et al. (2024) |
|
|
|
Ficus carica
|
Horaishi | Horaishi_ver.1 | Mori et al. (2017) |
|
|
 |
Ficus erecta
|
FE-Hiroshima-1 | FER_r1.1 | Shirasawa et al. (2020) |
|
 |
Cerasus x kanzakura
|
Atami-zakura | ATM_r1.0.pmol | Shirasawa et al. (2021) |
|
|
|
Cerasus x kanzakura
|
Kawazu-zakura | KWZ_r1.0.pmol | Shirasawa et al. (2021) |
|
|
 |
Cerasus x yedoensis
|
#136 | CYE_r3.1.pmol | Shirasawa et al. (2019) |
|
 |
Fragaria iinumae
|
iinumae1 | FII_r1.1 | Hirakawa et al. (2014) |
|
|
|
Fragaria nipponica
|
nipponica1 | FNI_r1.1 | Hirakawa et al. (2014) |
|
|
|
Fragaria nubicola
|
CFRA522 | FNU_r1.1 | Hirakawa et al. (2014) |
|
|
|
Fragaria orientalis
|
FRA536 | FOR_r1.1 | Hirakawa et al. (2014) |
|
|
|
Fragaria x ananassa
|
Reikou | FANhybrid_r1.2 | Hirakawa et al. (2014) |
|
|
|
Fragaria x ananassa
|
Reikou | FAN_r2.3 | Shirasawa et al. (2021) |
 |
Prunus avium
|
Satonishiki | PAV_r1.0 | Shirasawa et al. (2017) |
|
 |
Pyrus pyrifolia
|
Nijisseiki | PPY_r1.0 | Shirasawa et al. (2021) |
|
 |
Rosa multiflora
|
N/A | RMU_r2.0 | Nakamura et al. (2018) |
|
 |
Citrus kinokuni
|
Kishu mandarin | CKIhap1_r1.0 | Isobe et al. (2023) | ||
|
Citrus kinokuni
|
Kishu mandarin | CKIhap2_r1.0 | Isobe et al. (2023) | ||
|
Citrus kinokuni
|
Kishu mandarin | CKIuph_r1.0 | Isobe et al. (2023) | ||
 |
Citrus nobilis
|
Kunenbo mandarin | CKUhap1_r1.0 | Isobe et al. (2023) | ||
|
Citrus nobilis
|
Kunenbo mandarin | CKUhap2_r1.0 | Isobe et al. (2023) | ||
|
Citrus nobilis
|
Kunenbo mandarin | CKUuph_r1.0 | Isobe et al. (2023) | ||
 |
Citrus unshiu
|
Miyagawa wase | CUNphKi_r1.0 | Isobe et al. (2023) | ||
|
Citrus unshiu
|
Miyagawa wase | CUNphKu_r1.0 | Isobe et al. (2023) | ||
|
Citrus unshiu
|
Miyagawa wase | CUNuph_r1.0 | Isobe et al. (2023) |
 |
Ipomoea batatas
|
Xushu18 | IBA_r1.0 | Yoon et al. (2022) | ||
|
Ipomoea trifida
|
0431-1 | ITRk_r1.0 | Hirakawa et al. (2015) |
|
|
|
Ipomoea trifida
|
Mx23Hm | ITR_r1.0 | Hirakawa et al. (2015) |
|
|
|
Ipomoea trifida
|
Mx23Hm | ITR_r2.2 | Yoon et al. (2022) |
 |
Capsicum annuum
|
Takanotsume | CAN_r1.2.pmol | Shirasawa et al. (2023) |
|
 |
Nicotiana benthamiana
|
lab strain | Nbe.v1 | Kurotani et al. (2023) |
|
|
|
Nicotiana benthamiana
|
lab strain | Nbe.v1.1 | Kurotani et al. (2024) |
|
 |
Solanum cheesmaniae
|
LA0166 | SCH_r1.0.pmol | Iki et al. (2025) |
|
|
 |
Solanum lycopersicum
|
Heinz 1706 | SL4.0 | The Tomato Genome Consortium (2012) |
|
|
|
Solanum lycopersicum
|
LA1673 | SLYcer_r1.1 | Takei et al. (2021) |
|
|
 |
Solanum lycopersicum
|
Micro-Tom | SLM_r1.2 | Nagasaki et al. (2024) |
|
|
|
Solanum lycopersicum
|
Micro-Tom | SLM_r2.0.pmol | Shirasawa & Ariizumi (2024) |
|
|
 |
Solanum melongena
|
Nakate-Shinkuro | SME_r2.5.1 | Hirakawa et al. (2014) |
|
|
|
Solanum pimpinellifolium
|
LA1670 | SPI_r1.1 | Takei et al. (2021) |
|
 |
Vitis labruscana x Vitis vinifera
|
Shine Muscat | VSMuph_r2.0 | Shirasawa et al. (2022) |
|
 |
Turritopsis dohrnii
|
TD-1 | TUR_r2.0.1 | Hasegawa et al. (2023) |
|
 |
Felis catus
|
Senzu | AnAms1.0 | Matsumoto et al. (2024) |
|
 |
Meloidogyne incognita
|
Kmmt_Gs004 | MINJ2 | Asamizu et al. (2020) |
|
 |
Thermosynechococcus elongatus
|
BP-1 | ASM1134v1 | Nakamura et al. (2002) |
|
 |
Microcystis aeruginosa
|
NIES-843 | ASM1062v1 | Kaneko et al. (2007) |
|
 |
Gloeobacter violaceus
|
PCC 7421 | ASM1138v1 | Nakamura et al. (2003) |
|
 |
Bradyrhizobium japonicum
|
USDA110 | ASM1136v1 | Kaneko et al. (2002) |
|
 |
Mesorhizobium japonicum
|
MAFF 303099 | ASM962v1 | Kaneko et al. (2000) |
|
 |
Anabaena sp.
|
PCC 7120 | ASM970v1 | Kaneko et al. (2001) |
|
 |
Synechocystis sp.
|
PCC 6803 | ASM972v1 | Kaneko et al. (1996) |
|
