| Scientific name | Accession name | Assembly version | Publication | PR |
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Lyophyllum shimeji | AT787 | LshimejAT787 | Kobayashi et al. (2023) |
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Lentinula edodes | XR1 | xr1.hap1 | Yoshitake et al. (2025) |
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Lentinula edodes | XR1 | xr1.hap2 | Yoshitake et al. (2025) |
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Tricholoma matsutake | Matsutake | TMA_r1.1 | Kurokochi et al. (2023) |
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Asparagus kiusianus | K1 | AKIK1p1_r1.0 | Shirasawa et al. (2022) |
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Asparagus kiusianus | K1 | AKIK1p2_r1.0 | Shirasawa et al. (2022) |
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Asparagus kiusianus | K2 | AKIK2p1_r1.0 | Shirasawa et al. (2022) |
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Asparagus kiusianus | K2 | AKIK2p2_r1.0 | Shirasawa et al. (2022) |
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Chrysanthemum seticuspe | Gojo-0 | Gojo-0 v1 | Nakano et al. (2021) |
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Chrysanthemum seticuspe | XMRS10 | CSE_r1.0 | Hirakawa et al. (2019) |
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Gerbera hybrida | Opal | Ghyb_p1.1 | Aoyagi et al. (2026) |
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Arabidopsis thaliana | Col-1 | TAIR10 | The Arabidopsis Genome Initiative (2000) |
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Brassica rapa | Chiifu-401-42 | v3.0 | Wang et al. (2011) |
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Malcolmia littorea | MAL-LIT-1 [Sp-54] | MLI_r1.0 | Shirasawa et al. (2026) |
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Raphanus sativus | Aokubi S-h | RSA_r1.0 | Kitashiba et al. (2014) |
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Raphanus sativus | Okute-Sakurajima | RSAskr_r1.0 | Shirasawa et al. (2020) |
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Chenopodium quinoa | J075 | J075 | Kobayashi et al. (2024) |
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Chenopodium quinoa | J100 | J100 | Kobayashi et al. (2024) |
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Chenopodium quinoa | J131 | J131 | Kushino et al. (2025) | ||
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Chenopodium quinoa | Kd | Cqu_r1.0 | Yasui et al. (2016) |
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Spinacia oleracea | 03-009 | SOL_r1.1 | Hirakawa et al. (2021) |
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Dianthus caryophyllus | Francesco | DCA_r1.0 | Yagi et al. (2014) |
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Silene dioica | SdJapan_07M | Sdio1.0 | Akagi et al. (2025) | ||
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Silene latifolia | SLGerPM1 | Slat1.0 | Akagi et al. (2025) | ||
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Silene vulgaris | SvPH1 | Svul1.0 | Akagi et al. (2025) |
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Fagopyrum esculentum | BC1F6 | FES_r1.0 | Yasui et al. (2016) |
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Fagopyrum esculentum | GS1 | FesGS1_phased_r1.0 | Fawcett et al. (2023) |
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Fagopyrum esculentum | PL4 | FesPL4_r1.1_pseudomolecule_contigs | Fawcett et al. (2023) |
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Fagopyrum homotropicum | C9255 | Fho_r1.0_Chr1-8_utg | Fawcett et al. (2023) |
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Hydrangea macrophylla | Aogashima-1 | HMA_r1.2_0 | Nashima et al. (2021) |
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Hydrangea macrophylla | Aogashima-1 | HMA_r1.2_1 | Nashima et al. (2021) |
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Chamaecyparis obtusa | GFB00119 | COB_r1.0 | Shirasawa et al. (2022) |
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Chamaecyparis obtusa | GFB00119 | COB_r1.0.genome | Shirasawa et al. (2026) |
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Cryptomeria japonica | GFA01029 | CJA_r1.0 | Shirasawa et al. (2022) |
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Cryptomeria japonica | GFA01029 | CJA_r1.0.genome | Shirasawa et al. (2026) |
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Cunninghamia lanceolata | GFHN00090 | CLA_r1.0 | Shirasawa et al. (2022) |
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Cunninghamia lanceolata | GFHN00090 | CLA_r1.0.genome | Shirasawa et al. (2026) |
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Actinidia arguta | Ubaishi-male | AAR_r2.2 | Akagi et al. (2023) |
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Actinidia polygama | Hokkaido-male | APO_r1.1 | Akagi et al. (2023) |
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Actinidia rufa | Nakamura-B-male | ARU_r1.0 | Akagi et al. (2023) |
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Diospyros kaki | Taishu | DKA_r1.0 | Horiuchi et al. (2023) |
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Diospyros lotus | Kunsenshi-male | DLO_r1.0_pseudomolecules | Akagi et al. (2020) |
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Rhododendron kiyosumense | KMT1 | RKI_r1.0 | Shirasawa et al. (2021) |
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Rhododendron ripense | Hi-Oni1 | RRI_r1.1.pmol | Shirasawa et al. (2021) |
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Arachis duranensis | V14167 | V14167.gnm1.SWBf | Bertioli et al. (2016) |
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Arachis hypogaea | Tifrunner | Tifrunner.gnm2.J5K5 | Bertioli et al. (2019) |
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Arachis ipaensis | K30076 | K30076.gnm1.bXJ8 | Bertioli et al. (2016) |
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Glycine soja | W05 | ASM419377v2 | Xie et al. (2019) |
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Glycyrrhiza uralensis | 308-19 | Glur_r1.0 | Rai et al. (2022) |
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Lotus japonicus | MG-20 | Lj2.5 | Sato S et al. (2008) |
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Macrotyloma uniflorum | HPK-4 | MUN_r1.11 | Shirasawa et al. (2021) |
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Pisum sativum | JI128 | PSA_r1.0 | Shirasawa et al. (2021) |
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Trifolium alexandrinum | Fahl | TalF_r1.0 | Sato MP et al. (2024) |
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Trifolium alexandrinum | Helaly | TalH_r1.0 | Sato MP et al. (2024) |
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Trifolium subterraneum | Daliak | TSUd_r1.1 | Hirakawa et al. (2016) |
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Trifolium subterraneum | Daliak | TSUd_r3.0 | Shirasawa et al. (2023) |
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Vicia sativa | KSR5 | VSA_r1.0 | Shirasawa et al. (2021) |
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Castanea crenata | Ginyose | CCR_r1.0 | Shirasawa et al. (2021) |
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Eustoma grandiflorum | 10B-620 | Egra_v1.0 | Shirasawa et al. (2023) |
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Ophiorrhiza pumila | Benth | Opu_r1.4 | Rai et al. (2021) |
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Klebsormidium flaccidum | NIES-2285 | ASM70883v1 | Hori et al. (2014) |
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Saintpaulia ionantha | Kilauea | SIO_r2.0 | Kurata et al. (2024) |
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Perilla frutescens | SekihoS8 | Pfru_SekihoUp_1.0 | Kinoshita et al. (2025) |
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Veronica peregrina | Sakai03 | VPE_r1.0p | Hirano et al. (2025) |
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Jatropha curcas | N/A | JAT_r3.0 | Sato S et al. (2011) |
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Jatropha curcas | N/A | JAT_r4.5 | Hirakawa et al. (2012) |
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Malpighia emarginata | NRA309 | NRA309_r1.0.pmol | Shirasawa et al. (2024) |
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Eucalyptus camaldulensis | CPT1 | EUC_r1.0 | Hirakawa et al. (2011) |
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Oxalis corniculata | Green-leaved line | OCOG_r3.0 | Iimura et al. (2026) | ||
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Oxalis corniculata | Red-leaved line | OCOR_r3.0 | Iimura et al. (2026) |
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Larix kaempferi | GFE32203 | LKA_r1.0 | Shirasawa et al. (2022) |
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Ananas comosus | Yugafu | ACO_r3.3C.pmol | Nashima et al. (2022) |
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Ananas comosus | Yugafu | ACO_r3.3H | Nashima et al. (2022) |
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Echinochloa phyllopogon | R511 | EPH_r1.1 | Sato MP et al. (2023) |
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Hordeum vulgare | 10TJ18 | BPGv2-10TJ18 | Jayakodi et al. (2024) |
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Hordeum vulgare | Aizu6 | BPGv2-Aizu6 | Jayakodi et al. (2024) |
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Hordeum vulgare | Golden Melon | BPGv2-GoldenMelon | Jayakodi et al. (2024) |
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Oryza sativa | Kitaake | KIT_r1.0.pmol | Fujino et al., unpublished | ||
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Oryza sativa | Udai21 | UD21_r1.0 | Ikeda et al. (2025) |
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Triticum aestivum | Fielder | wheat_cv_fielder_v1_assembly | Sato K et al. (2021) |
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Zoysia japonica | Nagirizaki | ZJN_r1.1 | Tanaka et al. (2016) |
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Zoysia matrella | Wakaba | ZMW_r1.0 | Tanaka et al. (2016) |
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Zoysia pacifica | Zanpa | ZPZ_r1.0 | Tanaka et al. (2016) |
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Eschscholzia californica | Hitoezaki | ECA_r1.0 | Yamada et al. (2021) |
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Humulus japonicus | Seta-line | hic_chr_v1.1 | Akagi et al. (2025) |
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Humulus lupulus | 10-12 | haploid_v3.0 | Akagi et al. (2025) |
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Humulus lupulus | Saaz | haploid_v3.0 | Akagi et al. (2025) |
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Ficus carica | Caprifig 6085 | FCA6085_r1.1 | Ikegami et al. (2024) |
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Ficus carica | Horaishi | FCA_r2.3 | Ikegami et al. (2024) |
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Ficus carica | Horaishi | Horaishi_ver.1 | Mori et al. (2017) |
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Ficus erecta | FE-Hiroshima-1 | FER_r1.1 | Shirasawa et al. (2020) |
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Cerasus x kanzakura | Atami-zakura | ATM_r1.0.pmol | Shirasawa et al. (2021) |
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Cerasus x kanzakura | Kawazu-zakura | KWZ_r1.0.pmol | Shirasawa et al. (2021) |
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Cerasus x yedoensis | #136 | CYE_r3.1.pmol | Shirasawa et al. (2019) |
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Fragaria iinumae | iinumae1 | FII_r1.1 | Hirakawa et al. (2014) |
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Fragaria nipponica | nipponica1 | FNI_r1.1 | Hirakawa et al. (2014) |
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Fragaria nubicola | CFRA522 | FNU_r1.1 | Hirakawa et al. (2014) |
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Fragaria orientalis | FRA536 | FOR_r1.1 | Hirakawa et al. (2014) |
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Fragaria x ananassa | Reikou | FANhybrid_r1.2 | Hirakawa et al. (2014) |
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Fragaria x ananassa | Reikou | FAN_r2.3 | Shirasawa et al. (2021) |
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Prunus avium | Satonishiki | PAV_r1.0 | Shirasawa et al. (2017) |
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Pyrus pyrifolia | Nijisseiki | PPY_r1.0 | Shirasawa et al. (2021) |
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Rosa multiflora | N/A | RMU_r2.0 | Nakamura et al. (2018) |
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Citrus kinokuni | Kishu mandarin | CKIhap1_r1.0 | Isobe et al. (2023) | ||
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Citrus kinokuni | Kishu mandarin | CKIhap2_r1.0 | Isobe et al. (2023) | ||
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Citrus kinokuni | Kishu mandarin | CKIuph_r1.0 | Isobe et al. (2023) | ||
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Citrus nobilis | Kunenbo mandarin | CKUhap1_r1.0 | Isobe et al. (2023) | ||
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Citrus nobilis | Kunenbo mandarin | CKUhap2_r1.0 | Isobe et al. (2023) | ||
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Citrus nobilis | Kunenbo mandarin | CKUuph_r1.0 | Isobe et al. (2023) | ||
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Citrus unshiu | Miyagawa wase | CUNphKi_r1.0 | Isobe et al. (2023) | ||
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Citrus unshiu | Miyagawa wase | CUNphKu_r1.0 | Isobe et al. (2023) | ||
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Citrus unshiu | Miyagawa wase | CUNuph_r1.0 | Isobe et al. (2023) |
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Ipomoea batatas | Xushu18 | IBA_r1.0 | Yoon et al. (2022) | ||
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Ipomoea trifida | 0431-1 | ITRk_r1.0 | Hirakawa et al. (2015) |
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Ipomoea trifida | Mx23Hm | ITR_r1.0 | Hirakawa et al. (2015) |
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Ipomoea trifida | Mx23Hm | ITR_r2.2 | Yoon et al. (2022) |
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Capsicum annuum | Takanotsume | CAN_r1.2.pmol | Shirasawa et al. (2023) |
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Nicotiana benthamiana | lab strain | Nbe.v1 | Kurotani et al. (2023) |
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Nicotiana benthamiana | lab strain | Nbe.v1.1 | Kurotani et al. (2024) |
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Solanum cheesmaniae | LA0166 | SCH_r1.0.pmol | Iki et al. (2025) |
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Solanum lycopersicum | Heinz 1706 | SL4.0 | The Tomato Genome Consortium (2012) |
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Solanum lycopersicum | LA1673 | SLYcer_r1.1 | Takei et al. (2021) |
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Solanum lycopersicum | Micro-Tom | SLM_r1.2 | Nagasaki et al. (2024) |
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Solanum lycopersicum | Micro-Tom | SLM_r2.0.pmol | Shirasawa & Ariizumi (2024) |
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Solanum melongena | Nakate-Shinkuro | SME_r2.5.1 | Hirakawa et al. (2014) |
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Solanum pimpinellifolium | LA1670 | SPI_r1.1 | Takei et al. (2021) |
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Vitis labruscana x Vitis vinifera | Shine Muscat | VSMuph_r2.0 | Shirasawa et al. (2022) |
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Turritopsis dohrnii | TD-1 | TUR_r2.0.1 | Hasegawa et al. (2023) |
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Felis catus | Senzu | AnAms1.0 | Matsumoto et al. (2024) |
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Meloidogyne incognita | Kmmt_Gs004 | MINJ2 | Asamizu et al. (2020) |
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Thermosynechococcus elongatus | BP-1 | ASM1134v1 | Nakamura et al. (2002) |
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Microcystis aeruginosa | NIES-843 | ASM1062v1 | Kaneko et al. (2007) |
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Gloeobacter violaceus | PCC 7421 | ASM1138v1 | Nakamura et al. (2003) |
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Bradyrhizobium japonicum | USDA110 | ASM1136v1 | Kaneko et al. (2002) |
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Mesorhizobium japonicum | MAFF 303099 | ASM962v1 | Kaneko et al. (2000) |
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Anabaena sp. | PCC 7120 | ASM970v1 | Kaneko et al. (2001) |
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Synechocystis sp. | PCC 6803 | ASM972v1 | Kaneko et al. (1996) |
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